Biomolecular Modelling Books

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We have compiled the list of Best Reference Books on Biomolecular Modelling subject. These books are used by students of top universities, institutes and colleges. Here is the full list of best books on Biomolecular Modelling along with reviews.

Kindly note that we have put a lot of effort into researching the best books on Biomolecular Modelling subject and came out with a recommended list of best books. The table below contains the Name of these best books, their authors, publishers and an unbiased review of books on “Biomolecular Modelling” as well as links to the Amazon website to directly purchase these books. As an Amazon Associate, we earn from qualifying purchases, but this does not impact our reviews, comparisons, and listing of these top books; the table serves as a ready reckoner list of these best books.

List of Biomolecular Modelling Books with author’s names, publishers, and an unbiased review as well as links to the Amazon website to directly purchase these books.

1. Bio-Molecular Modelling

1. “Modelling of Biomolecular Structures and Mechanisms” by A Pullman and Joshua Jortner

“Modelling of Biomolecular Structures and Mechanisms” Book Review: The book is focused on the theme of biomolecular structures and their modelling. The main topics in the book include nucleic acids and their interactions, proteins and their interaction, membranes and their interactions, enzymatic processes and the pharmacological and medical aspects of these subjects.It also contains chapters like Structure Modeling of the Acetylcholine Receptor Channel and Related Ligand Gated Channels and Continuum-Model Studies of Redox Reactions, Complex Formation, and Electron Transfer: The Paradigm of Cytochrome c and Cytochrome c Peroxidase. It covers theoretical as well as practical aspects of the subject.

2. “Molecular Dynamics: With Deterministic and Stochastic Numerical Methods (Interdisciplinary Applied Mathematics)” by Ben Leimkuhler and Charles Matthews

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“Molecular Dynamics: With Deterministic and Stochastic Numerical Methods (Interdisciplinary Applied Mathematics)”Book Review: The book is designed for a broad audience especially audience of mathematics students. It covers the underpinnings of algorithms used for molecular dynamics simulation, including both deterministic and stochastic numerical methods. The book includes the basic theory of Hamiltonian mechanics and stochastic differential equations, as well as topics including symplectic numerical methods, the handling of constraints and rigid bodies, the efficient treatment of Langevin dynamics, thermostats to control the molecular ensemble, multiple time-stepping, and the dissipative particle dynamics method. The book enables the learners to find new and efficient methods and address particular challenges as they arise in complex applications.It also covers chapters like The Canonical Distribution and Stochastic Differential Equations and Numerical Methods for Stochastic Molecular Dynamics in great detail.

3. “Combined Quantum Mechanical and Molecular Mechanical Modelling of Biomolecular Interactions” by Tatyana Karabencheva-Christova

“Combined Quantum Mechanical and Molecular Mechanical Modelling of Biomolecular Interactions” : Book Review: The book is targeted to a wide audience of researchers, specialists, and students and is an excellent resource for protein chemists . The book shows analysis of proteins in depth. It discusses advances in application of powerful techniques in the biosciences. It also explains cutting-edge developments in protein chemistry and structural biology . The book gives a complete comparison of Quantum mechanic and modelling mechanic methods along with their applications .It also gives an overview on enzymatic halogenases and haloperoxidases as well as computational studies on their mechanism and functions.

4. “Biophysical Approaches Determining Ligand Binding to Biomolecular Targets” by Arne Schon and Alain Van Dorsselaer

“Biophysical Approaches Determining Ligand Binding to Biomolecular Targets” Book Review: The book is designed for biomolecular scientists at graduate or post-doctoral level in academia and industry and also for Biologists and chemists. It focuses on the latest advances in the application of biophysics to the study of ligand binding. It also gives an overview on current techniques to identify ligands, characterise their binding sites and understand their binding mechanisms. The book gives emphasis to the combined use of different techniques and their relative strengths and weaknesses. It enables the learners to figure out why some techniques are more suitable than others and find the possible synergies between them. The book describes how several complementary techniques can be used together for maximum effectiveness.

5. “Bioinformatics Research and Applications” by Anu Bourgeois and Xiang Wan

6. “Computer Simulation of Biomolecular Systems: Theoretical and Experimental Applications” by W F van Gunsteren and P K Weiner

“Computer Simulation of Biomolecular Systems: Theoretical and Experimental Applications” Book Review: The book focuses on methodological aspects of simulations and also includes simulation methodologies for specifically biological systems. The book emphasizes on structure-based ligand design. The book provides in depth knowledge of Molecular dynamics simulations which represent the most important theoretical approach to macromolecules of biological interest. The book gives a detailed overview of the form of potential functions. It also explains the different approaches to increase the basic time step in simulations that make use of a full atomic representation.Illustration of molecular dynamics and free energy perturbation calculations is also covered in the book.

7. “Biomolecular Simulations: Methods and Protocols (Methods in Molecular Biology)” by Luca Monticelli and Emppu Salonen

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“Biomolecular Simulations: Methods and Protocols (Methods in Molecular Biology)” Book Review: The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject. The book emphasizes many of the methods commonly used in molecular modelling of biological systems, including methods for electronic structure calculations, classical molecular dynamics simulations and coarse-grained techniques. It includes advanced techniques and recent methodological developments as well. The book features well-established computational methodologies, applications to real-world biological systems, as well as practical tips and general protocols on carrying out biomolecular simulations. This book reports on cutting-edge modeling techniques, methodologies and tools used to understand, design and engineer nanoscale communication systems, such as molecular communication systems. The book contains a detailed explanation on simulations of proteins, lipids, nucleic acids, and carbohydrates.The book gives theoretical as well as practical knowledge to the readers.

8. “Biomolecular Feedback Systems” by Domitilla Del Vecchio and Richard M Murray

“Biomolecular Feedback Systems” Book Review: The book is a comprehensive guide for advanced undergraduates and graduate students and can also serve as a self-contained reference for researchers. This book provides an overview on the principles and tools for modeling, analyzing, and synthesizing biomolecular systems. In-depth explanation of control and dynamical systems tools used to analyze models is provided in the book. These include tools for analyzing stability of equilibria, limit cycles, robustness, and parameter uncertainty. The book also covers the problem of modular composition of synthetic circuits, the tools for analyzing the extent of modularity, and the design techniques for ensuring modular behavior in great detail. The book contains numerous exercises along with illustrations for better understanding purposes.

9. “Modeling, Methodologies and Tools for Molecular and Nano-scale Communications” by Tadashi Nakano and Junichi Suzuki

“Modeling, Methodologies and Tools for Molecular and Nano-scale Communications” Book Review: The book is designed for graduate students and researchers working in fields of computer science, biological sciences and nanotechnology. The book covers the basics of molecular communication, including concept, models and designs. It gives a thorough explanation on specific types of molecular communication found in biological systems, such as neuronal communication in the brain. The book also highlights the types of nanoscale communication, such as fluorescence resonance energy transfer and electromagnetic-based nanoscale communication. It provides an explanation of the practical applications of nanomaterials in nanomedicine.The book presents the state of art in the emerging field of molecular and nanoscale communication.

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10. “Practical Skills in Biomolecular Sciences” by Weyers

“Practical Skills in Biomolecular Sciences” : Book Review: The book is an excellent resource for those studying within the biomolecular sciences (including biochemistry, biomedical sciences, biotechnology, genetics, microbiology and molecular biology). It gives it’s readers a solid grounding in the broader transferable skills, which are increasingly necessary to achieve a high level of academic success. The book gives effective support for the development of the laboratory and data analysis skills that learners will draw on time and again for the practical aspects of their studies. It covers topics like Information technology and learning resources and analytical techniques which includes advanced electrophoretic techniques and Electroanalytical techniques.


2. Biomolecular Modeling and Simulation

1. “Innovations in Biomolecular Modeling and Simulations” by Gero Wedemann and Filip Lankas

“Innovations in Biomolecular Modeling and Simulations” Book Review: The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject.This two volume set describes innovations in biomolecular modeling and simulation, in both the algorithmic and application fronts. The books describe progress and innovation in areas including: simulation algorithms for dynamics and enhanced configurational sampling, force field development, implicit solvation models, coarse-grained models, quantum-mechanical simulations, protein folding, DNA polymerase mechanisms, nucleic acid complexes and simulations, RNA structure analysis and design and other important topics in structural biology modeling.

2. “Frontiers in Computational Chemistry: Volume 2: Computer Applications for Drug Design and Biomolecular Systems” by Zaheer Ul-Haq and Jeffry D Madura

“Frontiers in Computational Chemistry: Volume 2: Computer Applications for Drug Design and Biomolecular Systems” Book Review: This book is designed for students in the fields of biology, chemistry, biochemistry, physics, and biophysics. It presents the latest research findings and methods in the diverse field of computational chemistry, focusing on molecular modeling techniques used in drug discovery and the drug development process. This book brings together a wide range of research into a single collection to help researchers keep up with new methods. Then focuses on computational chemistry approaches that can accelerate drug design.

3. “Biomolecular Modelling and Simulations” by Tatyana Karabencheva-Christova

“Biomolecular Modelling and Simulations” Book Review: The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject. The book is a resource for protein chemists. Each volume brings forth new information about protocols and analysis of proteins. Each thematically organized volume is guest edited by leading experts in a broad range of protein-related topics.The information provided in the volume is well supported by a number of high quality illustrations, figures, and tables.

4. “Biomolecular Simulation: GROMOS 96 Manual and User Guide” by Wilfred F van Gunsteren

“Biomolecular Simulation: GROMOS 96 Manual and User Guide” Book Review: The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject.This two volume set describes innovations in biomolecular modeling and simulation, in both the algorithmic and application fronts. The books describe progress and innovation in areas including: simulation algorithms for dynamics and enhanced configurational sampling, force field development, implicit solvation models, coarse-grained models, quantum-mechanical simulations, protein folding, DNA polymerase mechanisms, nucleic acid complexes and simulations, RNA structure analysis and design and other important topics in structural biology modeling.

5. “Guide to Biomolecular Simulations (Focus on Structural Biology)” by Oren M Becker and Martin Karplus

“Guide to Biomolecular Simulations (Focus on Structural Biology)” Book Review : The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject.The widespread application of molecular dynamics and related methodologies suggests that it would be useful to have available an introductory self-contained course by which students with a relatively limited background in chemistry, biology and computer literacy, can learn the fundamentals of the field.The Guide consists of six chapters which provide the fundamentals of the field and six chapters which introduce the reader to more specialized but important applications of the methodology.

6. “Coarse-Graining of Condensed Phase and Biomolecular Systems” by Gregory A Voth

“Coarse-Graining of Condensed Phase and Biomolecular Systems” Book Review: The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject. Each chapter focuses on specific examples of evolving coarse-graining methodologies and presents results for a variety of complex systems. It discusses two of the most successful coarse-graining schemes for soft matter: inverse and multiscale coarse-graining. The book also describes current coarse-grained model development for peptides and proteins at the amino acid level and larger length scales.

7. “Reconfigurable Logic: Architecture, Tools, and Applications (Devices, Circuits, and Systems)” by Pierre-Emmanuel Gaillardon

“Reconfigurable Logic: Architecture, Tools, and Applications (Devices, Circuits, and Systems)” Book Review: This book reviews current trends in reconfigurable platforms, providing valuable insight into the future potential of reconfigurable systems. It expounds on emerging technologies to enhance FPGA architectures, improve routing structures, and create non-volatile configuration flip-flops. Also exploits FPGAs for high-performance systems, efficient error correction codes, and high-bandwidth network routers with built-in security. Also explores classical FPGA architectures and their supporting tools. The book offers a snapshot of the state of the art of reconfigurable logic systems. Covering a broad range of architectures, tools, and applications.

8. “Computer Simulation of Biomolecular Systems: Theoretical and Experimental Applications: 3 (Computer Simulations of Biomolecular Systems)” by W F van Gunsteren and P K Weiner

“Computer Simulation of Biomolecular Systems: Theoretical and Experimental Applications: 3 (Computer Simulations of Biomolecular Systems)” Book Review: The books are aimed at graduate students and experts in structural biology and chemistry and the emphasis is on reporting innovative new approaches rather than providing comprehensive reviews on each subject.This two volume set describes innovations in biomolecular modeling and simulation, in both the algorithmic and application fronts. The books describe progress and innovation in areas including: simulation algorithms for dynamics and enhanced configurational sampling, force field development, implicit solvation models, coarse-grained models, quantum-mechanical simulations, protein folding, DNA polymerase mechanisms, nucleic acid complexes and simulations, RNA structure analysis and design and other important topics in structural biology modeling.

People who are searching for Free downloads of books and free pdf copies of these books on Biomolecular Modelling – we would like to mention that we don’t have free downloadable pdf copies of these good books and one should look for free pdf copies from these Authors only if they have explicitly made it free to download and read them.

We have created a collection of best reference books on “Biomolecular Modelling” so that one can readily see the list of top books on “Biomolecular Modelling” and buy the books either online or offline.

If any more book needs to be added to the list of best books on Biomolecular Modelling subject, please let us know.

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